To install RNAEditor follow these steps:

Required Software:

Install following tools to /usr/local/bin/:

• BWA
• Picard Tools Move all .jar files to /usr/local/bin/picard-tools/ (use version <= 1.119)
• GATK Use GATK version 3.5 with java 1.7, the newer versions are currently causing problems.
• Blat:
• MAC OSX 64-bit
• Linux 64-bit
• Bedtools

Required python packages:

RNAEditor requires the following python packages:

• numpy
• PyQt4
• matplolib
• pysam


• To install run sudo apt-get install python-numpy python-qt4 python-matplotlib python-pysam
• Alternatively you can install numpy, pysam and matplotlib by running: sudo pip install numpy pysam matplotlib

RNAEditor:

• Unix:RNAEditor.tar.gz
• Mac: RNAEditor.dmg
Note: If RNAEditor does not start the first time run ./RNAEditor.app/Contents/MacOS/RNAEditor
The Security restrictions from Apple are blocking the program at the first start.
• Source: GitHub